Detailed information of SNP:
|
SNP ID:
sf1017027686(Gbrowse)
Chromosome: chr10 Position: 17027686 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 92.72% | 7.28% |
| All Indica | 713 | 88.22% | 11.78% |
| All Japonica | 489 | 99.18% | 0.82% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 341 | 87.98% | 12.02% |
| Indica II | 185 | 86.49% | 13.51% |
| Indica Intermediate | 187 | 90.37% | 9.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017027686 | G->A | INTERGENIC | None |