Detailed information of SNP:
|
SNP ID:
sf1017032022(Gbrowse)
Chromosome: chr10 Position: 17032022 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.07% | 32.93% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017032022 | A->G | LOC_Os10g32649(LOC_Os10g32649.1) | Synonymous |