Detailed information of SNP:
|
SNP ID:
sf1017034004(Gbrowse)
Chromosome: chr10 Position: 17034004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 89.62% | 10.38% |
| All Indica | 791 | 99.12% | 0.88% |
| All Japonica | 485 | 83.71% | 16.29% |
| Aus | 59 | 35.59% | 64.41% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 20.69% | 79.31% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017034004 | G->A | LOC_Os10g32649(LOC_Os10g32649.1) | INTRON |