Detailed information of SNP:
|
SNP ID:
sf1017058339(Gbrowse)
Chromosome: chr10 Position: 17058339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 92.23% | 7.77% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 482 | 93.36% | 6.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 321 | 90.65% | 9.35% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017058339 | G->A | INTERGENIC | None |