Detailed information of SNP:
|
SNP ID:
sf1017058870(Gbrowse)
Chromosome: chr10 Position: 17058870 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 66.17% | 33.83% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 483 | 5.59% | 94.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 323 | 1.55% | 98.45% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 25.76% | 74.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017058870 | C->T | INTERGENIC | None |