Detailed information of SNP:
|
SNP ID:
sf1017058888(Gbrowse)
Chromosome: chr10 Position: 17058888 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 73.49% | 26.51% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 481 | 25.57% | 74.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 1.56% | 98.44% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017058888 | T->C | INTERGENIC | None |