Detailed information of SNP:



SNP ID: sf1017058888(Gbrowse)

Chromosome: chr10

Position: 17058888
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 73.49% 26.51%
All Indica799 99.50% 0.50%
All Japonica481 25.57% 74.43%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica321 1.56% 98.44%
Tropical Japonica94 91.49% 8.51%
Japonica Intermediate66 48.48% 51.52%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1017058888 T->C INTERGENIC None