Detailed information of SNP:
|
SNP ID:
sf1017060668(Gbrowse)
Chromosome: chr10 Position: 17060668 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.75% | 47.25% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017060668 | G->A | INTERGENIC | None |