Detailed information of SNP:
|
SNP ID:
sf1017100659(Gbrowse)
Chromosome: chr10 Position: 17100659 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 76.74% | 23.26% |
| All Indica | 747 | 59.57% | 40.43% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 56.23% | 43.77% |
| Indica II | 198 | 64.65% | 35.35% |
| Indica Intermediate | 204 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017100659 | C->T | INTERGENIC | None |