Detailed information of SNP:
|
SNP ID:
sf1017102510(Gbrowse)
Chromosome: chr10 Position: 17102510 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 68.77% | 31.23% |
| All Indica | 760 | 94.87% | 5.13% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 356 | 95.51% | 4.49% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 199 | 94.47% | 5.53% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017102510 | A->G | INTERGENIC | None |