Detailed information of SNP:
|
SNP ID:
sf1017155429(Gbrowse)
Chromosome: chr10 Position: 17155429 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 97.26% | 2.74% |
| All Indica | 669 | 94.92% | 5.08% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 302 | 91.72% | 8.28% |
| Indica II | 174 | 98.28% | 1.72% |
| Indica Intermediate | 193 | 96.89% | 3.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017155429 | G->A | LOC_Os10g32910(LOC_Os10g32910.1) | Non-Synonymous SNP |