Detailed information of SNP:
|
SNP ID:
sf1017167015(Gbrowse)
Chromosome: chr10 Position: 17167015 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.68% | 34.32% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 495 | 18.59% | 81.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017167015 | A->G | INTERGENIC | None |