Detailed information of SNP:
|
SNP ID:
sf1017169607(Gbrowse)
Chromosome: chr10 Position: 17169607 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 59.29% | 40.71% |
| All Indica | 787 | 34.94% | 65.06% |
| All Japonica | 464 | 94.83% | 5.17% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 368 | 23.91% | 76.09% |
| Indica II | 212 | 41.04% | 58.96% |
| Indica Intermediate | 207 | 48.31% | 51.69% |
| Temperate Japonica | 308 | 99.03% | 0.97% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017169607 | A->C | INTERGENIC | None |