Detailed information of SNP:
|
SNP ID:
sf1017208425(Gbrowse)
Chromosome: chr10 Position: 17208425 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 94.65% | 5.35% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 55 | 20.00% | 80.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017208425 | A->C | LOC_Os10g33000(LOC_Os10g33000.1) | Non-Synonymous SNP |