Detailed information of SNP:
|
SNP ID:
sf1017240400(Gbrowse)
Chromosome: chr10 Position: 17240400 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 79.97% | 20.03% |
| All Indica | 798 | 75.56% | 24.44% |
| All Japonica | 489 | 98.77% | 1.23% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017240400 | C->T | INTERGENIC | None |