Detailed information of SNP:
|
SNP ID:
sf1017240589(Gbrowse)
Chromosome: chr10 Position: 17240589 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.47% | 46.53% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 494 | 7.29% | 92.71% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017240589 | T->C | INTERGENIC | None |