Detailed information of SNP:
|
SNP ID:
sf1017250257(Gbrowse)
Chromosome: chr10 Position: 17250257 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 59.38% | 40.62% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 474 | 5.27% | 94.73% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 317 | 0.95% | 99.05% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017250257 | G->A | LOC_Os10g33060(LOC_Os10g33060.1) | Synonymous |