Detailed information of SNP:
|
SNP ID:
sf1017251028(Gbrowse)
Chromosome: chr10 Position: 17251028 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.35% | 40.65% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017251028 | T->G | INTERGENIC | None |