Detailed information of SNP:
|
SNP ID:
sf1017287121(Gbrowse)
Chromosome: chr10 Position: 17287121 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 50.36% | 49.64% |
| All Indica | 788 | 30.96% | 69.04% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 367 | 23.16% | 76.84% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017287121 | T->A | LOC_Os10g33130(LOC_Os10g33130.1) | UTR_3_PRIME |