Detailed information of SNP:
|
SNP ID:
sf1017289568(Gbrowse)
Chromosome: chr10 Position: 17289568 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 94.28% | 5.72% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017289568 | C->G | LOC_Os10g33130(LOC_Os10g33130.1) | Non-Synonymous SNP |