Detailed information of SNP:
|
SNP ID:
sf1017289654(Gbrowse)
Chromosome: chr10 Position: 17289654 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 94.73% | 5.27% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 487 | 96.71% | 3.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 83.72% | 16.28% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017289654 | G->A | LOC_Os10g33130(LOC_Os10g33130.1) | Synonymous |