Detailed information of SNP:
|
SNP ID:
sf1017333717(Gbrowse)
Chromosome: chr10 Position: 17333717 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.53% | 49.47% |
| All Indica | 799 | 18.77% | 81.23% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017333717 | G->A | INTERGENIC | None |