Detailed information of SNP:
|
SNP ID:
sf1017386798(Gbrowse)
Chromosome: chr10 Position: 17386798 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 58.67% | 41.33% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 495 | 4.85% | 95.15% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017386798 | G->A | LOC_Os10g33260(LOC_Os10g33260.1) | Non-Synonymous SNP |