Detailed information of SNP:
|
SNP ID:
sf1017498761(Gbrowse)
Chromosome: chr10 Position: 17498761 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 64.42% | 35.58% |
| All Indica | 778 | 99.49% | 0.51% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 360 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 205 | 99.02% | 0.98% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017498761 | C->T | LOC_Os10g33370(LOC_Os10g33370.1) | INTRON |