Detailed information of SNP:
|
SNP ID:
sf1017508329(Gbrowse)
Chromosome: chr10 Position: 17508329 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 66.43% | 33.57% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 475 | 7.58% | 92.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 321 | 0.93% | 99.07% |
| Tropical Japonica | 89 | 15.73% | 84.27% |
| Japonica Intermediate | 65 | 29.23% | 70.77% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017508329 | G->A | INTERGENIC | None |