Detailed information of SNP:
SNP ID:
sf1017599624(Gbrowse)
Chromosome: chr10 Position: 17599624 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 63.78% | 36.22% |
All Indica | 799 | 98.00% | 2.00% |
All Japonica | 497 | 5.23% | 94.77% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 94.37% | 5.63% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 6.38% | 93.62% |
Japonica Intermediate | 68 | 25.00% | 75.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1017599624 | G->A | INTERGENIC | None |