Detailed information of SNP:
|
SNP ID:
sf1017628126(Gbrowse)
Chromosome: chr10 Position: 17628126 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017628126 | G->A | INTERGENIC | None |