Detailed information of SNP:
|
SNP ID:
sf1017630568(Gbrowse)
Chromosome: chr10 Position: 17630568 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1186 | 57.34% | 42.66% |
| All Indica | 599 | 28.21% | 71.79% |
| All Japonica | 488 | 96.31% | 3.69% |
| Aus | 53 | 16.98% | 83.02% |
| Indica I | 262 | 28.63% | 71.37% |
| Indica II | 163 | 23.93% | 76.07% |
| Indica Intermediate | 174 | 31.61% | 68.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 93.26% | 6.74% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 32 | 59.38% | 40.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017630568 | T->C | LOC_Os10g33570(LOC_Os10g33570.1) | Non-Synonymous SNP |