Detailed information of SNP:
|
SNP ID:
sf1017630726(Gbrowse)
Chromosome: chr10 Position: 17630726 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.81% | 37.19% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017630726 | A->G | LOC_Os10g33570(LOC_Os10g33570.1) | Non-Synonymous SNP |