Detailed information of SNP:
|
SNP ID:
sf1017636237(Gbrowse)
Chromosome: chr10 Position: 17636237 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 61.89% | 38.11% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 495 | 4.85% | 95.15% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017636237 | T->G | INTERGENIC | None |