Detailed information of SNP:
|
SNP ID:
sf1017649213(Gbrowse)
Chromosome: chr10 Position: 17649213 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 63.86% | 36.14% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 494 | 5.26% | 94.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017649213 | C->T | LOC_Os10g33610(LOC_Os10g33610.1) | Non-Synonymous SNP |