Detailed information of SNP:
|
SNP ID:
sf1017772260(Gbrowse)
Chromosome: chr10 Position: 17772260 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.86% | 42.14% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017772260 | G->A | INTERGENIC | None |