Detailed information of SNP:
|
SNP ID:
sf1017839150(Gbrowse)
Chromosome: chr10 Position: 17839150 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 65.73% | 34.27% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017839150 | C->T | LOC_Os10g33790(LOC_Os10g33790.2) | INTRON |
| sf1017839150 | C->T | LOC_Os10g33790(LOC_Os10g33790.1) | INTRON |