Detailed information of SNP:
|
SNP ID:
sf1017864500(Gbrowse)
Chromosome: chr10 Position: 17864500 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.53% | 35.47% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017864500 | C->T | INTERGENIC | None |