Detailed information of SNP:
|
SNP ID:
sf1017877995(Gbrowse)
Chromosome: chr10 Position: 17877995 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 497 | 11.47% | 88.53% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017877995 | A->G | LOC_Os10g33830(LOC_Os10g33830.1) | INTRON |