Detailed information of SNP:
|
SNP ID:
sf1017880177(Gbrowse)
Chromosome: chr10 Position: 17880177 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 96.45% | 3.55% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 438 | 89.73% | 10.27% |
| Aus | 11 | 90.91% | 9.09% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 294 | 85.37% | 14.63% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017880177 | G->A | LOC_Os10g33830(LOC_Os10g33830.1) | Synonymous |