Detailed information of SNP:
|
SNP ID:
sf1017893875(Gbrowse)
Chromosome: chr10 Position: 17893875 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.39% | 38.61% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017893875 | T->C | INTERGENIC | None |