Detailed information of SNP:
|
SNP ID:
sf1017894252(Gbrowse)
Chromosome: chr10 Position: 17894252 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.34% | 33.66% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 496 | 11.69% | 88.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017894252 | T->G | INTERGENIC | None |