Detailed information of SNP:
|
SNP ID:
sf1017894506(Gbrowse)
Chromosome: chr10 Position: 17894506 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 56.98% | 43.02% |
| All Indica | 764 | 96.99% | 3.01% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 354 | 98.87% | 1.13% |
| Indica II | 202 | 93.07% | 6.93% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017894506 | T->G | INTERGENIC | None |