Detailed information of SNP:
|
SNP ID:
sf1017903250(Gbrowse)
Chromosome: chr10 Position: 17903250 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 59.69% | 40.31% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017903250 | C->T | LOC_Os10g33862(LOC_Os10g33862.1) | INTRON |