Detailed information of SNP:
|
SNP ID:
sf1017903274(Gbrowse)
Chromosome: chr10 Position: 17903274 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 59.48% | 40.52% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017903274 | G->A | LOC_Os10g33862(LOC_Os10g33862.1) | INTRON |