Detailed information of SNP:
|
SNP ID:
sf1017917520(Gbrowse)
Chromosome: chr10 Position: 17917520 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 61.11% | 38.89% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 453 | 7.28% | 92.72% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 309 | 0.97% | 99.03% |
| Tropical Japonica | 82 | 13.41% | 86.59% |
| Japonica Intermediate | 62 | 30.65% | 69.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017917520 | C->T | INTERGENIC | None |