Detailed information of SNP:
|
SNP ID:
sf1017924253(Gbrowse)
Chromosome: chr10 Position: 17924253 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017924253 | G->A | INTERGENIC | None |