Detailed information of SNP:
|
SNP ID:
sf1017991485(Gbrowse)
Chromosome: chr10 Position: 17991485 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 51.53% | 48.47% |
| All Indica | 759 | 20.55% | 79.45% |
| All Japonica | 461 | 94.58% | 5.42% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 355 | 4.51% | 95.49% |
| Indica II | 208 | 55.29% | 44.71% |
| Indica Intermediate | 196 | 12.76% | 87.24% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 69 | 88.41% | 11.59% |
| Japonica Intermediate | 59 | 72.88% | 27.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017991485 | G->A | LOC_Os10g33950(LOC_Os10g33950.1) | INTRON |