Detailed information of SNP:
|
SNP ID:
sf1018101798(Gbrowse)
Chromosome: chr10 Position: 18101798 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.99% | 38.01% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018101798 | T->A | LOC_Os10g34050(LOC_Os10g34050.1) | Non-Synonymous SNP |