Detailed information of SNP:
|
SNP ID:
sf1018110773(Gbrowse)
Chromosome: chr10 Position: 18110773 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.40% | 35.60% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018110773 | T->C | INTERGENIC | None |