Detailed information of SNP:
|
SNP ID:
sf1018223976(Gbrowse)
Chromosome: chr10 Position: 18223976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 56.10% | 43.90% |
| All Indica | 795 | 30.57% | 69.43% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 8.58% | 91.42% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 72.53% | 27.47% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018223976 | G->A | LOC_Os10g34300(LOC_Os10g34300.1) | Non-Synonymous SNP |