Detailed information of SNP:
|
SNP ID:
sf1018314038(Gbrowse)
Chromosome: chr10 Position: 18314038 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.92% | 47.08% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018314038 | T->C | INTERGENIC | None |