Detailed information of SNP:
|
SNP ID:
sf1018390219(Gbrowse)
Chromosome: chr10 Position: 18390219 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 53.20% | 46.80% |
| All Indica | 716 | 79.05% | 20.95% |
| All Japonica | 493 | 10.14% | 89.86% |
| Aus | 52 | 86.54% | 13.46% |
| Indica I | 322 | 79.19% | 20.81% |
| Indica II | 206 | 82.04% | 17.96% |
| Indica Intermediate | 188 | 75.53% | 24.47% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 90 | 37.78% | 62.22% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018390219 | T->C | LOC_Os10g34640(LOC_Os10g34640.1) | Synonymous |