Detailed information of SNP:
|
SNP ID:
sf1018395455(Gbrowse)
Chromosome: chr10 Position: 18395455 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1240 | 71.45% | 28.55% |
| All Indica | 639 | 54.15% | 45.85% |
| All Japonica | 484 | 91.12% | 8.88% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 290 | 47.59% | 52.41% |
| Indica II | 185 | 71.35% | 28.65% |
| Indica Intermediate | 164 | 46.34% | 53.66% |
| Temperate Japonica | 329 | 98.18% | 1.82% |
| Tropical Japonica | 89 | 65.17% | 34.83% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018395455 | C->T | LOC_Os10g34650(LOC_Os10g34650.1) | INTRON |