Detailed information of SNP:
|
SNP ID:
sf1018397662(Gbrowse)
Chromosome: chr10 Position: 18397662 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1184 | 78.38% | 21.62% |
| All Indica | 587 | 62.69% | 37.31% |
| All Japonica | 484 | 94.63% | 5.37% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 262 | 52.29% | 47.71% |
| Indica II | 180 | 78.33% | 21.67% |
| Indica Intermediate | 145 | 62.07% | 37.93% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 84 | 77.38% | 22.62% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1018397662 | A->C | LOC_Os10g34650(LOC_Os10g34650.1) | INTRON |